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A partially unwrapped Whole Wheat Pumpkin Cheesecake Muffin on a white wooden background.

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5 from 1 review

Pumpkin Cheesecake Muffins

Recipe by Bailey Sissom


  • Total Time35 minutes
  • Yield15 muffins 1x

Ingredients

For Pumpkin Muffins

All-purpose flour (1 ½ cups | 212g)
Baking powder (1 tsp | 4g)
Baking soda (½ tsp | 3g)
Salt (¾ tsp | 4.5g)
Pumpkin pie spice (2 ¼ tsp | 5.5g)
Granulated sugar (1 ¼ cups | 250g)
Vegetable oil (½ cup | 120ml)
Canned pumpkin puree (1 cup | 240g)
Large eggs (2 | ~100g)
Water (¼ cup | 60ml)
Regular chocolate chips (¾ cup | 135g + extra for topping)

For Cheesecake Topping

Cream cheese (8 oz | 226g, room temperature)
Brown sugar (⅓ cup | 67g)
Egg (1 | ~50g)
Vanilla extract (1 tsp | 5ml)


Instructions

  1. Preheat the oven to 350°F. Coat a muffin pan with nonstick spray or line with muffin liners.
  2. In a large mixing bowl, whisk together all-purpose flour (1 ½ cups), baking powder (1 tsp), baking soda (½ tsp), salt (¾ tsp), and pumpkin pie spice (2 ¼ tsp) until well combined.
  3. In a medium bowl, whisk granulated sugar (1 ¼ cups), vegetable oil (½ cup), canned pumpkin puree (1 cup), large eggs (2), and water (¼ cup) until smooth.
  4. Pour the pumpkin mixture into the dry ingredients and fold gently with a spatula until just combined. Do not overmix.
  5. Stir in chocolate chips (¾ cup) until evenly distributed.
  6. Divide the pumpkin batter evenly into the prepared muffin cups, filling each about ¾ full.
  7. In the bowl of a stand mixer or a medium bowl with an electric mixer, beat together cream cheese (8 oz), brown sugar (⅓ cup), egg (1), and vanilla extract (1 tsp) until smooth and fully combined.
  8. Add 1–2 tablespoons of the cream cheese mixture on top of each muffin using the same scoop. Swirl gently if desired.
  9. Sprinkle the tops with additional chocolate chips.
  10. Bake for 20–22 minutes, until a toothpick inserted into the muffin comes out with a few moist crumbs.
  11. Let the muffins cool in the pan for 5 minutes, then transfer to a wire rack to cool completely.  Store in an airtight container at room temperature for up to 4 days.
  • Prep Time: 15 minutes
  • Cook Time: 20 minutes
  • Category: Breakfast
  • Method: Baking
  • Cuisine: American